Innovations in Combating Infectious
Diseases Opportunities in
Therapeutics and Diagnostics through Application of Proteomics,
Genomics, Nanotechnology, and Novel Sources of Lead Generation
Publication Date: June 2010
Publisher: Business Insights
Pages:
250
Infectious disease is not merely a problem of the past; despite
significant breakthroughs achieved during the last century in the
development of antibiotic, antiviral, and antiparasitic drugs and
vaccines, the eradication or even control of many infectious
diseases has not been accomplished.
Of particular current concern are the problems of rapidly
developing drug resistance, emerging disease, re-emerging disease,
the threat of bioterrorism, and the speed of reaction to the
appearance of virulent strains posing pandemic threats. Furthermore,
the effective treatment of infectious diseases is dependent on
accurate and rapid diagnosis, and this in itself can present
significant challenges, especially in cases where the disease
progression is poorly understood or has long asymptomatic latency
(such as prion diseases).
Successful drugs and vaccines against infectious agents that put
millions of people at risk have potentially lucrative markets. The
key to developing those drugs is to understand the pathogenic
process and gain insight into where and how it can best be
interrupted. This report makes a detailed and comprehensive analysis
of the cutting edge of research aiming to reveal how bacteria,
viruses, fungi, and prions infect and affect their hosts. It also
assesses the new technologies and techniques that are being used to
design and develop the anti-infective drugs and diagnostic methods
of the 21st century.
Key features of this report
This report presents a snapshot of how new technologies and
approaches are being applied to the discovery of new drug targets,
vaccine candidates, lead compounds, and novel delivery systems that
will enhance diagnostics and therapeutics across the whole range of
infectious diseases:
- How proteomics is being used to identify biomarkers for new
diagnostics in infectious diseases
- How proteomics is being used to identify novel targets for
drug discovery and vaccine development in infectious diseases
- The impact of genomics on the search for novel targets for
infectious disease drug discovery
- Novel natural sources for lead generation in infectious
diseases
- Lead optimization techniques relevant to infectious diseases
- How the application of nanobiotechnology is impacting on
drug discovery and drug delivery in infectious diseases
Scope of this report
- Gain awareness of the most significant areas of unmet need
for anti-infective drug development.
- Build knowledge of the most promising diagnostics research -
ripe for commercialization - for MRSA and community-acquired
infections, bacterial meningitis, periodontal disease, and
innovative ways for predicting outcome in hepatitis infections.
- Discover how proteomics and genomics are making an
increasing impact on drug development programs, and how
important infectious agents can be tackled by drug and vaccine
approaches.
- Identify the new opportunities for small and large
biotechnology based companies to undertake vaccine development
based on proteomic and genomic studies
Key Market Issues
- More accurate and rapid diagnostics will remain a pressing
need combating prion diseases, sexually transmitted diseases,
HIV, hospital-acquired infections and bioterrorism threats.
- Diagnostics is a big area that is ripe for more commercial
development, particularly for diagnostic kits that are fast and
simple to operates by unskilled personnel, making them amenable
to the point-of-care use.
- Personalized medicine will remain a priority; drug
treatments need to be more tailored and efficient with fewer
side effects, less frequent dosing, and faster action..
- Using genomics to monitor and carry out surveillance of
infectious disease will become more important and more
necessary, so that new outbreaks, spread of disease, and danger
of pandemics can be better monitored and predicted by global
warning systems.
- The need to identify, monitor, and respond to bioterrorism
will continue to drive research into lethal viral infections
such as small pox and ebola, and bacterial diseases such as
anthrax and plague.
Key findings from this report
- Drug development, vaccine development, and novel approaches
to therapeutics are needed urgently for bacterial, viral,
fungal, and prion diseases, which cause high morbidity and
mortality in both the developing and the developed world.
- To date, there has been an intensive research effort to use
proteomics to detect, identify, characterize, and validate
biomarkers and protein signatures in diagnostics for many
different infectious diseases but validation and
commercialization has so far proved relatively elusive.
- Drug resistance, emerging infections and the threat of
bioterrorism make the understanding of virulence factors and
disease pathogenesis essential to form a springboard from which
to launch drug discovery programs.
- Genomics is being applied to drug discovery across the
spectrum of infectious diseases, whether they are caused by
bacteria, viruses, fungi, parasites, or prions. Genomic data can
be used in public health surveillance and monitoring of
infectious diseases, particularly when there is a threat of a
pandemic or bioterrorist attack.
- Novel sources of lead compounds to screen against newly
discovered targets are much needed; natural sources have already
provided the starting point for several successful anti-infectives,
and many sources remain to be explored.
Key questions answered
- Which areas of drug development in infectious disease could
have the greatest impact?
- How can the relatively new technology of proteomics be used
to develop leads for drug development?
- How are proteomic techniques being used in the design and
production of modern diagnostic tools for infectious diseases?
- How are genomic technologies changing the way lead compounds
are generated and providing ideas for innovative targeted drugs?
- In which bacteria, viral, fungal and prion diseases are
fundamental research efforts showing the most potential for
identifying compounds suitable for drug development?
Contents
- Executive Summary
- The need for new therapeutic approaches in infectious
diseases
- Proteomics in the design of novel diagnostics for
infectious diseases
- Proteomic methods in infectious disease drug discovery
- Genomics and its impact on drug discovery in infectious
diseases
- Natural sources of drug leads for infectious diseases
- Lead optimization in infectious disease drug discovery
- Applications of nanotechnology in infectious diseases
- Chapter 1 The need for new therapeutic approaches in
infectious diseases
- Summary
- Introduction
- Why do we need continuing drug development?
- Major areas of unmet need in infectious disease
- Report scope
- Chapter 2 Proteomics in the design of novel diagnostics for
infectious diseases
- Summary
- Introduction
- An overview of techniques in proteomics
- Separation techniques
- Two-dimensional gel electrophoresis (2D-GE)
- Separation using SELDI Protein Chip technology
- Identification techniques
- Mass spectrometry
- Bottom up and top down techniques
- Targeted proteomics using western blots and MS
- Antibody and aptamer microarray technology in proteomics
- Allied technology: glycan arrays
- Limitations of proteomic techniques
- Limitations of MALDI-TOF
- The need to be aware of artifacts
- The limitations of shotgun proteomics
- MALDI approaches - profiling and imaging
- Protein, antibody, and aptamer arrays
- Diagnostics in infectious diseases using proteomic
techniques
- Bacterial infections, proteomics, and diagnosis
- MRSA and community- and hospital-acquired infections
- Diagnosing bacterial meningitis and conjunctivitis
- Faster and easier diagnosis of tuberculosis
- Proteomics in the diagnosis of periodontal disease
- Proteomics in the detection of bacteria that pose
bioterrorist threats
- Using proteome microarrays to identify plague
- Diagnosis of anthrax using the host blood proteome
- Parasitic infections, proteomics, and diagnosis
- Developing diagnostic biomarkers for parasitic
infections
- Proteomic diagnostics for fungal infections
- Proteomics in the detection of viral infections
- SARS diagnosis using proteomics
- Hepatitis prognosis using proteomics
- New diagnostics for prion diseases
- Conclusions
- Chapter 3 Proteomic methods in infectious disease drug
discovery
- Summary
- Introduction
- Proteomics in target identification and lead discovery
in infectious diseases
- Using proteomics in drug discovery for parasitic
diseases
- Malaria - using proteomics to map parasitic gene
expression
- Liver fluke infections
- Echinococcus multilocularis
- Leishmaniasis
- Entamoeba histolytica
- Proteomics and antiviral discovery
- HIV
- Influenza
- Hepatitis B
- Proteomics in the discovery of novel antibacterial drug
targets
- Drug discovery for nosocomial infections
- Targeting bacteria that affect the gut
- Applying proteomics to rare bacterial diseases
- Proteomics and drug discovery for bacterial meningitis
- Proteomics and drug discovery in tuberculosis
- Potential therapeutics for bioterrorist threats
- Proteomics in antifungal drug discovery
- Proteomics in the generation of new vaccine candidates
- Antibacterial vaccines
- Towards a new vaccine for tuberculosis
- Antibiotic strains of Staphylococcus aureus
- Clostridium difficile
- Fungal vaccines
- Parasitic vaccines
- Leishmania amastigotes
- Toxoplasma gondii
- Schistosomiasis
- Malaria
- Viral vaccines
- Proteomics and HIV vaccine approaches
- Influenza vaccine strategies
- Conclusions
- Chapter 4 Genomics and its impact on drug discovery in
infectious diseases
- Summary
- Introduction
- Using genomics to identify new drug targets in
infectious diseases
- Using genomics to target pathogen factors
- Ligand-based chemogenomic approaches
- Using genomics to target host factors
- Novel genomic approaches to therapeutics in infectious
diseases
- RNA interference
- Ribozymes and flexizymes
- Replicons
- Genomics in antiviral drug discovery
- Genomics and influenza
- Background to influenza
- Key development areas
- How genomics can be applied
- Genomics and HIV
- Background to HIV
- Key development areas
- Genomics and flavivirus infection
- Background to flaviviruses
- Key development areas
- Genomics and hepatitis C
- Background to hepatitis C
- Key development areas
- Genomics and emerging viral disease
- SARS-associated coronavirus
- Nipah virus
- Dengue
- Genomics in antibacterial drug discovery
- General approaches to the discovery of new antibiotics
- Targeting metabolic networks
- Genomics in antiparasitic drug discovery
- Malaria
- In silico profiling and novel antimalarial candidates
- Targeting host cell factors
- Evolutionary patterning
- Kinetoplastid diseases
- Toxoplasmosis
- Schistosomiasis
- Key development areas
- Genomic characterization of parasitic pathogens
- Trypanosomatids
- Malaria
- Schistosomiasis
- Genomics in antifungal drug discovery
- Genomic insights into prion diseases
- Genomics in epidemiological surveillance and monitoring
- Genomic strategies for designing novel infectious
disease vaccines
- Terrorist activity with bioagents: genomic and combined
strategies for control
- Conclusions
- Chapter 5 Natural sources of drug leads for infectious
diseases
- Summary
- Introduction
- Drugs from natural sources worldwide
- Asia and Africa Science Platform Program
- Japan-China Joint Medical Workshop on Drug Discoveries
and Therapeutics
- 2008
- Drugs from China
- Drugs from natural sources: research in other developing
countries
- Yemen
- Cameroon
- Kenya
- Nigeria
- Brazil
- Peru
- Antibiotics from natural sources
- Antibacterials from plants
- Antimicrobials from endophytes
- Antimicrobials from other sources
- Antiviral drugs from natural sources
- Potential of phenolics of natural origin as anti-HIV
agents
- Medicinal plant extracts and activity against herpes
simplex
- Effect of sulfated astragalus polysaccharide on the
cellular infectivity of infectious bursal disease virus
- Antiviral compound derived from the plant Melia
azedarach
- Antifungal drugs from natural sources
- Antifungal agents derived from plants
- Activity of isoxazolidinone-containing compounds in the
treatment of serious mycoses
- Antiparasitic agents from natural sources
- Artemisinin
- Other antimalarial drug candidates from natural sources
- Plant-derived antimalarial agents: new leads and
efficient
- phytomedicines
- Cytotoxic and antiplasmodial compounds from the roots of
- Strophioblachia fimbricalyx
- Antiplasmoidal alkaloids from Cassia siamea
- Marine actinomycetes against human malaria
- Non-malarial parasitic diseases: leishmania and
trypanosomes
- Biosurfactants and derivation from natural sources
- Potential applications of biosurfactants in medicine
- Probiotic bacteria and biosurfactants for nosocomial
infection control
- Antimicrobial biosurfactants from marine Bacillus
circulans
- Pseudomonas aeruginosa rhamnolipids disperse Bordetella
- bronchiseptica biofilms
- Chapter 6 Lead optimization in infectious disease drug
discovery
- Summary
- Introduction
- What is lead optimization?
- How is lead optimization conducted?
- Lead optimization is a cyclical process
- New drugs for old
- Lead optimization can make or break drug discovery
- The outcome of the lead optimization process
- Techniques used in lead optimization
- Lead optimization in infectious diseases
- In silico tools
- Using in silico tools in drug discovery for tuberculosis
- Using in silico tools in drug discovery for malaria
- Using in silico tools in HIV drug discovery
- High content cellular imaging in infectious diseases
- Application to bacterial diseases
- Toxicogenomics-based assays in infectious diseases
- What is the difference between toxicogenetics and
toxicogenomics?
- Genetic susceptibility factors in infectious diseases
- Crystallographic approaches in infectious diseases
- Antibiotic drug discovery
- HIV drug discovery
- Intelligent design in infectious diseases
- Partnerships, databases, and networks
- The TDR Drug Targets Database
- TDR Activities
- TDR achievements and goals
- The Helminth Drug Initiative
- HDI activities
- HDI achievements and goals
- The Drugs for Neglected Diseases initiative (DNDi)
- DNDi achievements to date
- Conclusions
- Chapter 7 Applications of nanotechnology in infectious
diseases
- Summary
- Introduction
- The use of nanotechnology in diagnosis
- Quantum dot probes
- Synthetic polymers
- Nanochips
- The use of nanotechnology in novel therapeutics for
infectious diseases
- Novel delivery methods for antibiotics
- Using bacteriophages to deliver drugs
- Targeting of bacteriophage systems using polymeric
nanostructures
- Aerosol delivery systems
- Photodynamic therapy systems
- Nanoemulsions and nanoparticles
- Biofilms
- Biofilm infections in cystic fibrosis
- Biofilm infections related to catheters
- Biofilm infections on prosthetic devices
- Novel therapeutic development strategies
- Peptide therapeutics
- Use of nanotechnology to combat tuberculosis
- Use nanotechnology to combat pneumonia
- Use of nanotechnology to combat malaria
- Use of nanotechnology to combat Sin Nombre hantavirus
infection
- Using nanotechnology to target fungal infections
- Candidiasis
- New nanovaccine strategies for infectious diseases
- Delivering nanovaccines by injection
- Mucosal delivery
- Gene vaccines
- Novel drug delivery using nanotechnology
- Nanotubes
- Polyphosphazenes and delivery of vaccine antigens
- Solid lipid nanoparticles
- Conclusions
- Bibliography
- Glossary
- Index
- List of Figures
- Figure 2.1: Overview of proteomics
- Figure 2.2: Standard proteomic approaches
- Figure 2.3: Two-dimensional fluorescence difference gel
electrophoresis (2D-DIGE) workflow
- Figure 2.4: Example of SELDI-TOF workflow
- Figure 2.5: Sites of the body usually affected by MSRA
infections
- Figure 2.6: Pulmonary TB
- Figure 2.7: Trichonomas vaginalis in a Pap smear
- Figure 3.8: Distribution of proteins produced at
different life-cycle stages of Plasmodium falciparum
- Figure 3.9: Clostridium difficile colonies on a blood
agar plate
- Figure 4.10: Structure-activity relationship homology
flowchart
- Figure 4.11: Novel antiviral strategies based on the HCV
life cycle
- Figure 4.12: Target identification via pathogen and host
genome sequencing
- Figure 4.13: Emergence of MRSA in the US
- Figure 4.14: Phylogenetic reconstruction based on
orthologous glycerol kinase sequences
- Figure 4.15: Timeline of antifungal drug development
- Figure 6.16: Summary of techniques used in lead
optimization
- Figure 6.17: Attrition rates and current drug R&D
pipeline for neglected diseases
- Figure 7.18: Relationship of nanobiotechnology to
nanomedicine and other biotechnologies
- Figure 7.19: Schematic representation of a drug-carrying
bacteriophage
- Figure 7.20: Biofilm maturation
- Figure 7.21: Single-walled carbon nanotube bundles
(SWNT) with adsorbed antibody presenting that antibody to
T-cells Table 2.1: Advantages and disadvantages of SELDI
- List of Tables
- Table 2.2: Advantages and disadvantages of MALDI
- Table 2.3: Deaths in the UK annually since 1990 from CJD
of all known causes
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